Simple approach to bacterial genomes comparison based on Average Nucleotide Identity (ANI) using fastANI and ANIclustermap

Klaudia Musiał; Leon Petruńko; Dawid Gmiter

doi:10.18778/1730-2366.18.10

Autor

Klaudia Musiał Jan Kochanowski University of Kielce, Faculty of Natural Sciences, Institute of Biology, Department of Microbiology, Poland https://orcid.org/0009-0001-0657-2304
Leon Petruńko Jan Kochanowski University of Kielce, Faculty of Natural Sciences, Institute of Biology, Department of Microbiology, Poland https://orcid.org/0009-0004-8346-5440
Dawid Gmiter Jan Kochanowski University of Kielce, Faculty of Natural Sciences, Institute of Biology, Department of Microbiology, Poland https://orcid.org/0000-0001-8663-129X

DOI:

https://doi.org/10.18778/1730-2366.18.10

Słowa kluczowe:

bacterial genomes comparison, bacterial phylogeny, Average Nucleotide Identity (ANI), fastANI, ANIclustermap

Abstrakt

The Average Nucleotide Identity (ANI) was proposed as a standard for taxonomic affiliation of newly sequenced bacterial genomes. However, usage of ANI value as a means of strains phenotypic diversity offers a relatively easy way for studding bacterial phylogeny. Here we present a simple approach to bacterial genomes comparison based on ANI using fastANI and ANIclustermap. Both programs are available as an open-source tools and can be run using simple command lines. We present protocol for programs installation as a conda packages, that facilitate it utilization. Further, we explain how to prepare commands to perform the analysis. We believed our work could be useful for young scientist that begin their experience with bioinformatics.

Pobrania

Brak dostępnych danych do wyświetlenia.

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Google Scholar DOI: https://doi.org/10.1186/s13059-021-02344-9